Requirement for TP73 and Genetic Alterations Originating from its Intragenic Super-enhancer in Adult T-cell Leukemia (Leukemia, Sep 2022)

Jolynn Zu Lin Ong # 1Rui Yokomori # 1Regina Wan Ju Wong 1Tze King Tan 1Ryuzo Ueda 2Takashi Ishida 3Shinsuke Iida 4Takaomi Sanda 5 6

Affiliations

  • 1Cancer Science Institute of Singapore, National University of, Singapore, 117599, Singapore.
  • 2Department of Tumor Immunology, Aichi Medical University School of Medicine, Nagakute, 480-1195, Japan.
  • 3Department of Immunology, Nagoya University Graduate School of Medicine, Nagoya, 466-8560, Japan.
  • 4Department of Hematology and Oncology, Nagoya City University Graduate School of Medical Sciences, Nagoya, 467-8601, Japan.
  • 5Cancer Science Institute of Singapore, National University of, Singapore, 117599, Singapore. takaomi_sanda@nus.edu.sg.
  • 6Department of Medicine, Yong Loo Lin School of Medicine, National University of Singapore, 117599, Singapore, Singapore. takaomi_sanda@nus.edu.sg.
#Contributed equally.

Abstract

Adult T-cell leukemia/lymphoma (ATL) is a genetically complex hematological malignancy derived from mature T cells. Using an integrative approach, we previously identified genes recurrently associated with super-enhancers in ATL. One of those genes was TP73, a TP53 family gene; however, the roles and function of TP73 and its super-enhancer in ATL pathogenesis are poorly understood. Our study demonstrates that TP73 is highly activated under the control of a super-enhancer in ATL cells but not in normal T cells or other hematological malignancies examined. Full-length TP73 is required for ATL cell maintenance in vitro and in vivo via the regulation of cell proliferation and DNA damage response pathways. Notably, recurrent deletions of TP73 exons 2-3 were observed in a fraction of primary ATL cases that harbored the super-enhancer, while induction of this deletion in cell lines further increased proliferation and mutational burden. Our study suggests that formation of the TP73 intragenic super-enhancer and genetic deletion are likely sequentially acquired in relation to intracellular state of ATL cells, which leads to functional alteration of TP73 that confers additional clonal advantage.

PMID: 35908104    DOI: 10.1038/s41375-022-01655-5